dumbmatter.com

Online home of Jeremy Scheff


Projects

Big Online Projects

Basketball GM - Basketball simulation video game. It's written entirely in client-side JavaScript and you can play it right in your web browser.

Avatic - Various web stuff I made before starting grad school. Largely defunct or abandoned.

Mini Online Projects

CSV SQL Live - Run SQL queries on CSV files in your web browser.

SAS7BDAT Web Viewer - Open SAS files in your web browser. Because you always wanted to do that, right?

Screw - Alter the pitch and tempo of MP3s.

fakeIndexedDB - A pure JS in-memory implementation of the IndexedDB API.

Vote and Die - Are you more likely to cast a meaningful vote or die in an accident on your way to the polling both? Find out!

Flockas - No description would suffice.

Barbarian Conquest - Minigame built on a partial web-based port of Civilization 4. I built this mainly to play around with TypeScript, but it's not horrible.

faces.js - A JavaScript library that generates and displays cartoon faces as SVGs, somewhat reminiscent of how the Nintendo Wii generates random Miis. I wrote it for Basketball GM, probably nobody else uses it.

Interactive HRV Figures - Reproduce results from one of my papers in your web browser.

My Favorite Academic Publications

  1. Mathematical modeling of the heat-shock response in HeLa cells
    Scheff JD, Stallings JD, Reifman J, Rakesh V
    Biophys J 2015, 109(2):182-193
    PMID: 26200855 | doi:10.1016/j.bpj.2015.06.027 | Paper (PDF)

  2. On heart rate variability and autonomic activity in homeostasis and in systemic inflammation
    Scheff JD, Griffel B, Corbett SA, Calvano SE, Androulakis IP
    Math Biosc 2014, 252:36-44
    PMID: 24680646 | doi:10.1016/j.mbs.2014.03.010 | Paper (PDF)

  3. Transcriptional implications of ultradian glucocorticoid secretion, in homeostasis and in the acute stress response
    Scheff JD, Calvano SE, Lowry SF, Androulakis IP
    Physiol Genomics 2012, 44(2):121-129
    PMID: 22128089 | doi:10.1152/physiolgenomics.00128.2011

My Other Academic Publications

  1. A late binding, distributed, NoSQL warehouse for integrating patient data from clinical trials
    Yang E, Scheff JD, Shen SC, Farnum MA, Sefton J, Lobanov VS, Agrafiotis DK
    Database 2019, baz032
    doi:10.1093/database/baz032 | Paper (PDF)

  2. The impact of stochasticity and its control on a model of the inflammatory response
    Mavroudis PD, Scheff JD, Doyle JC, Vodovotz Y, Androulakis IP
    Computation 2019, 7(1):3
    doi:10.3390/computation7010003 | Paper (PDF)

  3. Predicting critical transitions in a model of systemic inflammation
    Scheff JD, Calvano SE, Androulakis IP
    J Theor Biol 2013, 7(338):9-15
    PMID: 23973206 | doi:10.1016/j.jtbi.2013.08.011

  4. Translational applications of evaluating physiologic variability in human endotoxemia
    Scheff JD, Mavroudis PD, Calvano SE, Androulakis IP
    J Clin Monit Comput 2013, 27(4):405-415
    PMID: 23203205 | doi:10.1007/s10877-012-9418-1

  5. A multiscale modeling approach to inflammation: A case study in human endotoxemia
    Scheff JD, Mavroudis PD, Foteinou PT, An G, Calvano SE, Doyle J, Dick TE, Lowry SF, Vodovotz Y, Androulakis IP
    J Comp Phys 2013, 244(4):279-289
    doi:10.1016/j.jcp.2012.09.024 | Postprint (PDF)

  6. Systems biology of circadian-immune interactions
    Mavroudis PD, Scheff JD, Calvano SE, Androulakis IP
    J Innate Immun 2013, 5:153-162
    PMID: 23006670 | doi:10.1159/000342427 | Postprint (PDF)

  7. Modeling physiologic variability in human endotoxemia
    Scheff JD, Mavroudis PD, Foteinou PT, Calvano SE, Androulakis IP
    Crit Rev Biomed Eng 2012, 40(4):313-322
    PMID: 23140122 | doi:10.1615/CritRevBiomedEng.v40.i4.60

  8. Linking inflammation, cardiorespiratory variability, and neural control in acute inflammation via computational modeling
    Dick TE, Molkov YI, Nieman G, Hsieh YH, Jacono FJ, Doyle J, Scheff JD, Calvano SE, Androulakis IP, An G, Vodovotz Y
    Front Physiol 2012, 3:222
    PMID: 22783197 | doi:10.3389/fphys.2012.00222 | Paper (PDF)

  9. Entrainment of peripheral clock genes by cortisol
    Mavroudis PD, Scheff JD, Calvano SE, Lowry SF, Androulakis IP
    Physiol Genomics 2012, 44(11):607-621
    PMID: 22510707 | doi:10.1152/physiolgenomics.00001.2012

  10. Pulsatile glucocorticoid secretion: origins and downstream effects
    Scheff JD, Kosmides AK, Calvano SE, Lowry SF, Androulakis IP
    IEEE Trans Biomed Eng 2011, 58(12):3504-3507
    PMID: 21775253 | doi:10.1109/TBME.2011.2162236 | Postprint (PDF)

  11. Modeling autonomic regulation of cardiac function and heart rate variability in human endotoxemia
    Scheff JD, Mavroudis PD, Calvano SE, Lowry SF, Androulakis IP
    Physiol Genomics 2011, 43(16):951-964
    PMID: 21673075 | doi:10.1152/physiolgenomics.00040.2011

  12. Assessment of pharmacologic area under the curve when baselines are variable
    Scheff JD, Almon RR, DuBois DC, Jusko WJ, Androulakis IP
    Pharm Res 2011, 28(5):1081-1089
    PMID: 21234658 | doi:10.1007/s11095-010-0363-8 | Postprint (PDF)

  13. Modeling the influence of circadian rhythms on the acute inflammatory response
    Scheff JD, Calvano SE, Lowry SF, Androulakis IP
    J Theor Biol 2010, 264(3):1068-1076
    PMID: 20307551 | doi:10.1016/j.jtbi.2010.03.026 | Postprint (PDF) | Supplementary

  14. A new symbolic representation for the identification of informative genes in replicated microarray experiments
    Scheff JD, Almon RR, DuBois DC, Jusko WJ, Androulakis IP
    OMICS 2010, 14(3):239-248
    PMID: 20455749 | doi:10.1089/omi.2010.0005 | Paper (PDF)